I tried by putting the select switch to bootload and then trying to connect via c0ntrol and c0bb0x, neither worked. When in bootload mode (via select switch) with would give a bunch of LEDs on, then one led (step 16) and I could then go back the to the regular modes via select switch which doesnt sound right, I was under the impression that bootload mode would put it in a loop.
Some additional info: The JTAG programmer I got was a wash, I could ready and write the fuses and lockbits but couldnt write the flash, it would return 0x00 for everything on verify,
The way I did get it to work was to remap the ISP pins like you mapped out and write it with my AVRISP mk2 via avrdude. Is there anything in particular I should try with regard to the bootloader? I assumed it would be no different when writing bootloaders for other devices (i.e. Mutable Instruments stuff)
One other thing, the way this board is set up, the ISP pins are not wired correctly. They are wired 1:1 off the spec sheets so the MISO and MOSI pins are wired to pins 6 and 7 of the 40 pin connector, not like in your instructions (10, 11 pins). This is why I could never get the ISP programming to work right until I read the bottom of your wiki post about the pinswap. IDK if this would mess up the functionality of the bootloader..


